Index: abyss-1.3.0/bin/abyss-pe
===================================================================
--- abyss-1.3.0.orig/bin/abyss-pe	2011-09-09 14:59:21.000000000 -0700
+++ abyss-1.3.0/bin/abyss-pe	2011-09-11 09:39:29.000000000 -0700
@@ -2,6 +2,7 @@
 # Run the ABySS paired-end assembler.
 # Written by Shaun Jackman <sjackman@bcgsc.ca>.
 
+PATH:=/usr/lib/abyss:${PATH}
 SHELL=/bin/bash -o pipefail
 
 # Integrate with Sun Grid Engine (SGE)
