Zebrafish (Danio rerio, Zv9) and X.tropicalis (Xenopus tropicalis, JGI_4.2) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 62. Zebrafish was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignments| Minimum score (minScore) | 30 |
| Database type (t) | dnax |
| Query type (q) | dnax |
| Mask out repeats (mask) | lower |
| Mask out repeats on query (qmask) | lower |
Number of alignment blocks: 191372
| Genome coverage(bp) | Coding exon coverage (bp) | |
|---|---|---|
| Zebrafish |
|
|
| 22,762,917 out of 1,412,464,843 | 18,218,244 out of 39,233,654 | |
| X.tropicalis |
|
|
| 15,502,688 out of 1,511,717,716 | 12,551,899 out of 30,481,746 |