Chicken (Gallus gallus, WASHUC2) and X.tropicalis (Xenopus tropicalis, JGI_4.2) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 62. Chicken was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignments| Minimum score (minScore) | 30 |
| Database type (t) | dnax |
| Query type (q) | dnax |
| Mask out repeats (mask) | lower |
| Mask out repeats on query (qmask) | lower |
Number of alignment blocks: 184575
| Genome coverage(bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
|
|
| 23,077,069 out of 1,100,480,441 | 15,583,083 out of 24,644,731 | |
| X.tropicalis |
|
|
| 20,579,489 out of 1,511,717,716 | 14,255,648 out of 30,481,746 |