Chicken (Gallus gallus, WASHUC2) and Anole Lizard (Anolis carolinensis, AnoCar1.0) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 53. Chicken was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignments| Minimum score (minScore) | 30 |
| Database type (t) | dnax |
| Query type (q) | dnax |
| Mask out repeats (mask) | lower |
| Mask out repeats on query (qmask) | lower |
Number of alignment blocks: 310034
| Genome coverage(bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
|
|
| 36,576,845 out of 1,100,480,441 | 17,952,761 out of 24,644,731 | |
| Anole Lizard |
|
|
| 33,879,676 out of 1,781,602,899 | 16,379,447 out of 24,193,389 |