Rat (Rattus norvegicus, RGSC3.4) and Tetraodon (Tetraodon nigroviridis, TETRAODON8) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 50. Rat was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignments| Minimum score (minScore) | 30 |
| Database type (t) | dnax |
| Query type (q) | dnax |
| Mask out repeats (mask) | lower |
| Mask out repeats on query (qmask) | lower |
Number of alignment blocks: 171906
| Genome coverage(bp) | Coding exon coverage (bp) | |
|---|---|---|
| Rat |
|
|
| 18,834,504 out of 2,718,897,334 | 14,308,066 out of 33,849,387 | |
| Tetraodon |
|
|
| 13,558,441 out of 358,618,246 | 11,472,002 out of 30,080,167 |